BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology

  1. Lookup NU author(s)
  2. Dr Goksel Misirli
  3. Dr Jennifer Hallinan
  4. Dr Matthew Pocock
  5. Dr Simon Cockell
  6. Jochen Weile
  7. Professor Anil Wipat
Author(s)Misirli G, Hallinan JS, Pocock M, Cockell SJ, Weile J, Wipat A
Publication type Report
Series TitleSchool of Computing Science Technical Report Series
Year2011
DateFebruary 2011
Report Number1237
Pages5
Full text is available for this publication:
BacillOndex is a semantically-rich, integrated knowledge base for Bacillus subtilis. The system comprises a software plug-in for the Ondex system, allowing a user to mine a variety of Bacillus subtilis data sources, together with the resulting integrated dataset that contains data about genes, gene products and their interactions. The data are presented in a computationally amenable format, and can be visualized using the data integration tool Ondex.Availability and Implementation: The BacillOndex dataset, the Ondex plug-in and the workflow files are freely available at http://research.ncl.ac.uk/synthetic_biology/downloads.html
InstitutionSchool of Computing Science, University of Newcastle upon Tyne
Place PublishedNewcastle upon Tyne
URLhttp://www.cs.ncl.ac.uk/publications/trs/papers/1237.pdf
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