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Experiences with e-Science workflow specification and enactment in bioinformatics

Lookup NU author(s): Dr Peter Li, Professor Anil Wipat

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Abstract

Workflow techniques form an important part of in-silico experimentation within the bioinformatics domain and potentially allow the eScientist to describe and enact their experimental processes in a structured, repeatable and verifiable way. Bioinformaticians routinely use Web-based resources within their in-silico experiments. However, the use of current web service orchestration techniques is problematic, and represents a significant barrier to take-up by the bioinformatics community, due to the rapidly evolving and competing standards, a lack of freely available tools, limited support for interaction with stateful services, and inappropriate levels of abstraction for the bioinformatics domain. As a result, the EPSRC funded myGrid project has, in collaboration with the European Bioinformatics Institute and the Human Genome Mapping Project, developed a graphical toolset and workflow enactor which uses its own high level representation of a process flow, including specification of processing units, data transfers and execution constraints.


Publication metadata

Author(s): Addis M, Ferris J, Greenwood M, Li P, Marvin D, Oinn T, Wipat A

Editor(s): Cox, SJ

Publication type: Conference Proceedings (inc. Abstract)

Publication status: Published

Conference Name: UK e-Science All Hands Meeting 2003

Year of Conference: 2003

Pages: 459-466

Publisher: Engineering and Physical Sciences Research Council

URL: http://www.nesc.ac.uk/events/ahm2003/AHMCD/pdf/108.pdf


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