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SARGE: A tool for creation of putative genetic networks

Lookup NU author(s): Dr Oliver Shaw, Professor Colin Harwood, Dr Jason Steggles, Professor Anil Wipat

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Abstract

Summary: SARGE is a tool for creating, visualizing and manipulating a putative genetic network from time series microarray data. The tool assigns potential edges through time-lagged correlation, incorporates a clustering mechanism, an interactive visual graph representation and employs simulated annealing for network optimization. © Oxford University Press 2004; all rights reserved.


Publication metadata

Author(s): Shaw OJ, Harwood C, Steggles LJ, Wipat A

Publication type: Article

Publication status: Published

Journal: Bioinformatics

Year: 2004

Volume: 20

Issue: 18

Pages: 3638-3640

ISSN (print): 1367-4803

ISSN (electronic): 1367-4811

Publisher: Oxford University Press

URL: http://dx.doi.org/10.1093/bioinformatics/bth395

DOI: 10.1093/bioinformatics/bth395

PubMed id: 15247099


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