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BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology

Lookup NU author(s): Dr Goksel Misirli, Dr Jennifer Hallinan, Dr Matthew Pocock, Dr Simon Cockell, Jochen Weile, Professor Anil Wipat

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Abstract

BacillOndex is a semantically-rich, integrated knowledge base for Bacillus subtilis. The system comprises a software plug-in for the Ondex system, allowing a user to mine a variety of Bacillus subtilis data sources, together with the resulting integrated dataset that contains data about genes, gene products and their interactions. The data are presented in a computationally amenable format, and can be visualized using the data integration tool Ondex.Availability and Implementation: The BacillOndex dataset, the Ondex plug-in and the workflow files are freely available at http://research.ncl.ac.uk/synthetic_biology/downloads.html


Publication metadata

Author(s): Misirli G, Hallinan JS, Pocock M, Cockell SJ, Weile J, Wipat A

Publication type: Report

Series Title: School of Computing Science Technical Report Series

Year: 2011

Pages: 5

Source Publication Date: February 2011

Report Number: 1237

Institution: School of Computing Science, University of Newcastle upon Tyne

Place Published: Newcastle upon Tyne

URL: http://www.cs.ncl.ac.uk/publications/trs/papers/1237.pdf


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